PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10013401m
Common NameCARUB_v10013401mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 544aa    MW: 60673.5 Da    PI: 8.502
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10013401mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.3e-05140162123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C+k F r  nL+ H r H
  Carubv10013401m 140 FVCEICSKGFQRDQNLQLHRRGH 162
                      89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.6E-5139162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.79E-6139162No hitNo description
PROSITE profilePS5015710.887140162IPR007087Zinc finger, C2H2
SMARTSM003550.036140162IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280142162IPR007087Zinc finger, C2H2
SMARTSM00355220182212IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.79E-6212237No hitNo description
SMARTSM00355180217237IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
LGFKYRERER EEEDNRVSLV HHNLFLSPSL LLGFLFCLFR LVMMNKDMLL HQHHHQPQQD  60
ENMSNLTSAS GDQASVSSGN ITEASGSNYF PHHQQQQQQE QFCLPDSQPQ KKRRNQPGNP  120
DPESEVIALS PKTLMATNRF VCEICSKGFQ RDQNLQLHRR GHNLPWKLKQ RSNKEVIRKK  180
VYVCPEATCV HHDPSRALGD LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DCKAHSKTCG  240
TKEYRCDCGT LFSRRDSFIT HRAFCEALAE ETAREVVLPQ NQNNQQNPLL IHQSSSYPHQ  300
HQTQPNVNVS SSSSSSHNII NSLHFEHANN GTSHGNSSSN HLHTFSMKKE QQNNDHNISY  360
HHSIPPWLAP HPRDLTSSNP NPSNGGGGGL FSLASPAMSA TALLQKAAQM GSTKTPPLPP  420
TTGFERSTHN KNLTTTMAPM MTSPSAFNNN NSQVMFQDYN ASGFDNQGGE EAFDEAFGGF  480
LRTNEATATR SDKSKSGGGE GLTRDFLGLR PLMSHNEILS FAGLGNCINT SASEQLHPKP  540
WQG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166179KLKQRSNKEVIRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00355DAPTransfer from AT3G13810Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3617970.0AF361797.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296703.10.0hypothetical protein CARUB_v10013401mg, partial
SwissprotQ9LRW70.0IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLR0G2R10.0R0G2R1_9BRAS; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.3__1485__AT3G13810.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.10.0indeterminate(ID)-domain 11